Plant MITE

SE2810773

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9778
Sorghum bicolor
SE2810773
Tc1/Mariner
St9
chromosome_2:5665801-5666062
TA
TACTCCCTCCATCCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAACTTTATA

Secondary structure and sequence

TSD TIR

5'

3'

                    A     C   C                                        CT     ---------    AGGATAATAACATTTATGATATCAACTAAGTATCATTAGGTTCT
TACTCCCTCCATCCCAAATT TAAGT ATT CAAGAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAA  TTATA         TGGT                                            
|||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||||         ||||                                            T
ATGAGGGAGGTAGGGTTTAA ATTCA TAA GTTCTTAGAACCTCTCAGTTTCGTAGAGTTCAAACTGGTT  AATAT         TGTT                                            
                    C     T   A                                        TT     CTTTTTTAA    TCAAACACCGTAGTTTATCTATATGTTACTTTTATATTAATTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810773

TACTCCCTCCATCCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAACTTTATATGGTAGGATAATAACATTTATGATATCAACTAAGTATCATTAGGTTCTTCATTAATTATATTTTCATTGTATATCTATTTGATGCCACAAACTTTGTAATTTTTTCTATAATTTTGGTCAAACTTGAGATGCTTTGACTCTCCAAGATTCTTGAAATTACTTACAATTTGGGATGGAGGGAGTA

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