SE2850775

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9780
  • Sorghum bicolor
  • SE2850775
  • PIF/harbinger
  • To19
  • chromosome_6:44858918-44859134
  • TTA
  • AGGGGGTGTTTGGGACTGCTCCACAAACTCTGCTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 -----       ------AAA          TAAA     CCATGGAGCAGCTCCACCAAAAACTGGAGTTTGTGGAGTACCTCTTTAGGTGCTCTC
  AGGGGGTGTTTGGGACT     GCTCCAC         CTCTGCTCCA    CTCCA                                                         
  |||||||||||||||||     |||||||         ||||||||||    |||||                                                          
  TCCCCCACAAACCTTGA     CGAGGTG         GAGACGAGGT    GCAAA                                                         
AT                 CAAGT       CAAAAAGTC          ----     AAATCGGTTTGCCAAAGTCGAGGTGCGTGAGTCAAGCTCCTTTTTCTCACCTCAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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