SE2850776

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9781
  • Sorghum bicolor
  • SE2850776
  • PIF/harbinger
  • To3
  • chromosome_2:13937499-13937747
  • TGA
  • AGGCCTTGTTTAGTTCTGAAAAGTAAAAAGTTTTCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                ----      G              -TA         TTTC    -   TGTGACAAATATTATCCAATCATGGACTAACTAGGATCAAAAGATTCATCTCGTGATTTACA
  AGGCCTTGTTTAGTTC    TGAAAA TAAAAAGTTTTCGG   CTGTAGCAC    GTTT GTT                                                              
  ||||||||||||||||    |||||| ||||||||||||||   |||||||||    |||| |||                                                              G
  TCCGGAACAAATCAAG    ATTTTT GTTTTTCAAAAGTT   AGAGGCAGT    GTAG TTA                                                              
AG                TGCG      G              CTA         ----    C   GAACACAGTGTACGTACTTTGTAATTTATATCTGCTTTTGTTTTTGATTAATGTGTCAAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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