SE2830779

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9784
  • Sorghum bicolor
  • SE2830779
  • hAT
  • Hat54
  • chromosome_7:53165321-53165903
  • CAAAACAT
  • CCATGTTTTCAGATCG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAACAT                ------   --   --   -      TTAATCGTGATTAGTCGTCCTTATCGTAACTGCGTGCTCGATAAGTTTCGTCGATTCGATCAGGTTGATCAGAAACCTTATCGTCCGATTAGATGCGATTAGTCGCGATTAGTCGTCCGATAAGGGTAGCAGGACGATAAGTTGGGCCAGTACAGGAATATTGTATTTAGGCCTGTAGGAAGAATTAGGCCCACCTTAAGCCGGCCAATTAGGGTAAGAAAAGAACAAGAGTGAGTGAGTGAGTGTC
        CCATGTTTTCAGATCG      GAC  GAC  TAA TCGCGA                                                                                                                                                                                                                                                       
        ||||||||||||||||      |||  |||  ||| ||||||                                                                                                                                                                                                                                                        
        GGTACAAAAGTCTAGC      GCT  GAT  ACA ACTGGT                                                                                                                                                                                                                                                       
TACAAAAC                ATAATA   TA   CA   A      GGCTAGTCTGCTGATTAGCGCTAATCAGTAGCTAGTCCCAGCTAATCAGCCAGACTAGCCCGACTAGTCTGTAAATCAGCAGGAATACGGATCTATTGGACTAGCTGGTACATATATGATATATATATACTACATTTATATACTTAAGTACCGTATTACTTAGTAATAGTACCACTAAACCGGTGAATGTACATTAACGTCGAACGACTACGGACTAAACCGGTGTTTGTACTCGAGAACGGAGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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