Plant MITE

SE2830781

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9786
Sorghum bicolor
SE2830781
hAT
Hat49
chromosome_3:59965465-59966025
ATTGCCAA
TTGCCAACAGGGGCGTCCC

Secondary structure and sequence

TSD TIR

5'

3'

A   C   -            AGATAAATAT   A   AGTTCAAAA  -   - GTGAAGGCCTAACATTTATTATCAAAATCTAAAAAAGATAATATCAAATATCAATATACTACAAAGACAATGTATAAAAGATTAACTAAATAAAATAGGGATTGTGCATGGAATTTATACTAGGCAATGATCACCGTCTGGCGTCCTAATCTGGGTCCAGCCGTCTAGGATTGCTACTAGGTCTCGACTCTTAAGCGACGAACAACACCAAGGGCAAGGAACAAGTCTAAGGGACGA
 TTG CAA CAGGGGCGTCCC          GAG CCC         CA ATA A                                                                                                                                                                                                                                             
 ||| ||| ||||||||||||          ||| |||         || ||| |                                                                                                                                                                                                                                              
 AAC GTT GTCTCCGCAGGG          CTC GGG         CA GCC G                                                                                                                                                                                                                                             
    C   A            ---------C   -   ---------  C   T ACACGCTGGCTTGACCCGGATATTTTAAATATCCGGGGTTTTAAATGATTCAAAAGATTCATATATATTATTAAAATCCAAACAAAATTAATCATTTAATCAGTATCTCTGAGTTATTTATACCGGACGATGAAAGAAGCTCTCTTTCGTGTAATTCAGATACCAGCACTTAATCTTTTCAGATACTGGCCATTAAGAAGAAGTGTATTCAAACATTGGGAAGCACTAAAATACCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830781

ATTGCCAACAGGGGCGTCCCAGATAAATATGAGACCCAGTTCAAAACAATAAGTGAAGGCCTAACATTTATTATCAAAATCTAAAAAAGATAATATCAAATATCAATATACTACAAAGACAATGTATAAAAGATTAACTAAATAAAATAGGGATTGTGCATGGAATTTATACTAGGCAATGATCACCGTCTGGCGTCCTAATCTGGGTCCAGCCGTCTAGGATTGCTACTAGGTCTCGACTCTTAAGCGACGAACAACACCAAGGGCAAGGAACAAGTCTAAGGGACGAAGCCATAAAATCACGAAGGGTTACAAACTTATGTGAAGAAGAATTACCGGTCATAGACTTTTCTAATTCACGACCATAGACTTAATGTGCTTTCTCTCGAAGAAAGTAGCAGGCCATATTTATTGAGTCTCTATGACTAATTTACTAATTAAAACAAACCTAAAATTATTATATATACTTAGAAAACTTAGTAAATTTTGGGGCCTATAAATTTTATAGGCCCAGTTCGGTCGCACAGTCCGCACGGGCTCCGGGACGCCTCTGATTGCCAA

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