SE2850782

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9787
  • Sorghum bicolor
  • SE2850782
  • PIF/harbinger
  • To9
  • chromosome_1:50629924-50630568
  • TTA
  • AGAGCATCCCCAACCGTTTTGCAAATAGGCTTTGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TT          C            -   A  C    -  -TTCAT   -    CAAAA            ---CACCTAT    CGGTTTGGTATTTGAACTTTGCAATTTTATTAACTTGGCAAAAAGAGGGAAAGGATTGGCATATATGCCAAGCCTGTTCACACTTGGCATTGGGAAACTGGCGCGCGGCTACAGGTTGAGGTCGCGCGAGTTTGGCGACATCCCGCCGCCAGACTTTCCTGCGAACTGCCCATCGGTCTTCCATCATCGCCAGGTACTCCATCGATGCCCTCCCAATTGTTTGTGTTTTTGCCTATTGGTCTT
  AGAGCATCCC AACCGTTTTGCA AAT GG TTTG CA      GGA TTTG     AAGTCTTAAAAA          CCAA                                                                                                                                                                                                                                                   
  |||||||||| |||||||||||| ||| || |||| ||      ||| ||||     ||||||||||||          ||||                                                                                                                                                                                                                                                   C
  TCTCGTAGGG TTGGCAAAATGT TTA CC AAAC GT      CCT AAAC     TTCAGAGTTTTT          TCTA                                                                                                                                                                                                                                                   
AT          -            A   A  -    C  TTACTC   C    ---AG            TTATACCGTT    TTTTTTTCCGTTAGAGGTTACTAAACCGTAATTAGTGAACCGTTTTTTCTTTTAATACCTGGGTGTGTTAAAAAACGGCTCGAAAAGAGGAGGGGCGCACAACCCACTTACAAGCGCCGTTTAAATAAAAACGGCTCCGCGACTCCAGCGCCGCAAACACGTATCGGCGAGCCTCAAACCGCCGACCTTAGAAACGGCCGTTTTTGCTAGGCTTCCCGTAGCTACCTCATGGACCGCAACTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End