SE2850787

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9792
  • Sorghum bicolor
  • SE2850787
  • PIF/harbinger
  • To44
  • chromosome_6:55656823-55657174
  • TGA
  • AGAGCAACCACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG             CGTTGATCAAAA            CATTATAATAATCTGTATCAACTAGCTGAAACATTGTGAGACCAGTTTATAGAGTAGTCCATAGTGAAAGGTATTCATAAGCTTATGGACTACCTATAGAGAATAAAAATTTTTATTTTCTTACTTCTTTCCATATCTCTCTC
  AGAGCAACCACAA            GTAGTCCATAGG                                                                                                                                               
  |||||||||||||            ||||||||||||                                                                                                                                                
  TCTCGTTGGTGTT            ACATATACCTGG                                                                                                                                               
AG             ------------            TTCATCAGGTATATGTACCCTGAGTGTATTGATCAGGTATCGATAACAAAAGAAGAGTGTTACATATACCTGATTCATCAGATATTCTACCCTGGGTTTCTCCTATTTTTTAATAAATAGAAGTAAGGTGGTCGGTGATGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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