SE2850788

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9793
  • Sorghum bicolor
  • SE2850788
  • PIF/harbinger
  • To49
  • chromosome_6:52835077-52835377
  • TAA
  • AGGGCCTGTTTAGATT

Secondary structure and sequence

TSD    TIR
5'



3'
TA   G         A  GGAA  --           TGGG    A        G GTC   A G    CG    G ----------G     - GAAACTAATAAAAAAAACAAATTACATAGCTCGTCAGGAAACTGCAAGACAAATTTATTAAGC
  AGG CCTGTTTAG TT    AC  GAAAATTTTTT    TGTC CATCGGAT T   GGA G ATGT  GGAG G           TTTTT A                                                               
  ||| ||||||||| ||    ||  |||||||||||    |||| |||||||| |   ||| | ||||  |||| |           ||||| |                                                               A
  TCC GGACAAATC AA    TG  TTTTTAAAAAG    GTAG GTAGTTTA A   CCT T TACG  CCTT T           ATTCG A                                                               
AA   G         -  AAGG  GA           -TAG    G        G -AA   G G    TA    G AATTTACATCT     G TCAATGAGGTACTAATCGGAATTCACGATGTCATTGGGTGTATACGATTACTGTCTAATTAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End