Plant MITE

SE2810792

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9797
Sorghum bicolor
SE2810792
Tc1/Mariner
St4
chromosome_5:5375781-5376024
TA
TACTCCCTCCGTCTCAAACAGACCGATGTTTTTTACTTTGACCAATCATGTTTGACCACTCGTCTTATTCAAAATTTTTGTGTAAAT

Secondary structure and sequence

TSD TIR

5'

3'

                  ---C      A    T  T     G CCA   A          C          C   A             --    AAATAGATAAATCATTATTAAAGTACCT
TACTCCCTCCGTCTCAAA    AGACCG TGTT TT ACTTT A   ATC TGTTTGACCA TCGTCTTATT AAA TTTTTGTGTAAAT  TCTA                            
||||||||||||||||||    |||||| |||| || ||||| |   ||| |||||||||| |||||||||| ||| |||||||||||||  ||||                            C
ATGAGGGAGGCAGAGTTT    TCTGGC ACAA AA TGAAA T   TAG ACAAACTGGT GGCAGAATAA TTT AAAAACATATTTA  GGAG                            
                  TTTT      A    C  C     G CTG   A          A          T   A             TA    ATAAAACTATACTGAATAAACTAGTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810792

TACTCCCTCCGTCTCAAACAGACCGATGTTTTTTACTTTGACCAATCATGTTTGACCACTCGTCTTATTCAAAATTTTTGTGTAAATTCTAAAATAGATAAATCATTATTAAAGTACCTCTAATGATCAAATAAGTCATATCAAAATAGAGGATATTTATACAAAAAATTTTAATAAGACGGATGGTCAAACAAGATGTCTGAAAGTCAACAACAACGGTCTTTTTTTTGAGACGGAGGGAGTA

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