Plant MITE

SE2850795

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9800
Sorghum bicolor
SE2850795
PIF/harbinger
To2
chromosome_3:2052949-2053196
TAA
AGGCCTTGTTTAGTTCTAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA                    AAA   T       TTTTCAA    -  --   ----  -CA  -  ATCT --    CGTATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGG
  AGGCCTTGTTTAGTTCTAAA   TTT GCAAAAT       ATTC TC  CGT    CA   TC GA    T  TAGA                                                       
  ||||||||||||||||||||   ||| |||||||       |||| ||  |||    ||   || ||    |  ||||                                                        
  TCCGGAACAAATCAAGATTT   AAA CGTTTTA       CTCG GA  TCG    AG   AC TA    A  TGTT                                                       
AA                    AAA   C       -------    T  CA   TTAA  CAA  A  ---- AC    TATAACAAGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAGGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850795

TAAGGCCTTGTTTAGTTCTAAAAAATTTTGCAAAATTTTTCAAATTCTCCGTCACATCGAATCTTTAGACGTATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGGTCGGAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCCATGATTGAACAATATTTGTCAAATACAAACGAAATTGCTACAGTGCTCATTTTGCCAAAAAATTTAGAACTAAACAAGGCCTAA

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