Plant MITE

SE2850796

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9801
Sorghum bicolor
SE2850796
PIF/harbinger
To10
chromosome_1:48066270-48066414
TTA
AGGCCTTGTTTGGATGTAGTCGGATTTTCATCAATCCACATGTGTTGGTGTGGATTGGAGTGGAACTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 A         TCA                  T         A      C  GAA
  AGGCCTTGTTTGGATGT GTCGGATTT   TCAATCCACATGTGTTGG GTGGATTGG GTGGAA TT   
  ||||||||||||||||| |||||||||   |||||||||||||||||| ||||||||| |||||| ||    
  TCCGGAACAAACCTACA CAGCCTAAG   AGTTAGGTGTACACAACC CACCTAACC CACCTT AA   
AT                 A         TGG                  T         C      -  ATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2850796

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2850796