Plant MITE

SE2850797

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9802
Sorghum bicolor
SE2850797
PIF/harbinger
To4
chromosome_7:4398254-4398489
TAA
AGGCCTTGTTTAGTTGGGGAAAATTTTTGGTT

Secondary structure and sequence

TSD TIR

5'

3'

TA               -            -T    TTG   - CTGTAGCACTTTCTTTTGTATTTAGTAATTATTTTCTAATTATGGACTAACTAGGCTCAAAAGATTCGTCTCGTAAA
  AGGCCTTGTTTAGTT GGGGAAAATTTT  GGTT   GCT A                                                                             
  ||||||||||||||| ||||||||||||  ||||   ||| |                                                                              
  TCCGGAACAAATCAA TTTTTTTTAAAG  CTAA   TGG C                                                                             
AA               G            TT    ---   G AGTGTAGCTTAGAAATTTACGTACATATCTCGTAATTTATATCTATTTTTTATTGGTTAATATGTCAAACGGACATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850797

TAAGGCCTTGTTTAGTTGGGGAAAATTTTTGGTTTTGGCTACTGTAGCACTTTCTTTTGTATTTAGTAATTATTTTCTAATTATGGACTAACTAGGCTCAAAAGATTCGTCTCGTAAATTACAGGCAAACTGTATAATTGGTTATTTTTTATCTATATTTAATGCTCTATACATGCATTTAAAGATTCGATGTGACGGGTAATCTTGAAATTTTTTTTGAACTAAACAAGGCCTAA

Copy Cancel