Plant MITE

SE2810802

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9807
Sorghum bicolor
SE2810802
Tc1/Mariner
St34
chromosome_7:61068973-61069268
TA
TACTCCCTCCGTTCTGAAATAAAGTGT

Secondary structure and sequence

TSD TIR

5'

3'

     C       C  A    A     -ATTCT  -CA             - G     ATAGTACATTTGAGGAACAAGAAGATAATATTTACTTAAATAAAGTTACGGAAGAGGAAAGTAATTGAGTGCTTACCATATTTTCTATAAA
TACTC CTCCGTT TG AATA AGTGT      GC   TTTGAGATATGTC C CAAAT                                                                                           
||||| ||||||| || |||| |||||      ||   ||||||||||||| | |||||                                                                                            
ATGAG GAGGCAG AC TTAT TTACA      CG   AGATTCTGTTTTA T CTTTC                                                                                           
     A       A  G    A     CAACAC  ATA             T -     TCCCACTATCTGCGTATATGGGAAATGAATTGAAGGATTAGATAATTTTAAACTAGGATAAACGTACTAATTTCTCACGTTAGATTCAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810802

TACTCCCTCCGTTCTGAAATAAAGTGTATTCTGCCATTTGAGATATGTCCGCAAATATAGTACATTTGAGGAACAAGAAGATAATATTTACTTAAATAAAGTTACGGAAGAGGAAAGTAATTGAGTGCTTACCATATTTTCTATAAAAAAACTTAGATTGCACTCTTTAATCATGCAAATAGGATCAAATTTTAATAGATTAGGAAGTTAAGTAAAGGGTATATGCGTCTATCACCCTCTTTCTTATTTTGTCTTAGAATAGCCACAACACATTATATTGCAAGACGGAGAGAGTA

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