Plant MITE

SE2850808

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9813
Sorghum bicolor
SE2850808
PIF/harbinger
To24
chromosome_4:3393730-3394386
ATT
TGGCCCTGTTTGGATCC

Secondary structure and sequence

TSD TIR

5'

3'

AT               C ATG     G GTTAGATTTAGCTATTTGGGGCTCAAATAGCCCTAAAGTATCCAAACATGAGGGTTAGATTGGGGTTATTTGCATCTAACCCACCCAAAAAACTATCCCCCCAAAGAGGTGCTTATTTGGGCTATTTGGGACTATTTAAGGCGGGGCCCACAGGAAAAGGGATCGGCTGTATCGCACGGGATCTCCACTCACGATGCCTCCCAGCCACGATCCCTCCCAGTTACCAGCACTGCTGCCTCCCAGCTCGCCTCGCCTCCGCCTCTCAACCGCGCCACCACCTCCAAGCCGTGCTGCCGCCTCC
  TGGCCCTGTTTGGAT C   GGTTA A                                                                                                                                                                                                                                                                                                             
  ||||||||||||||| |   ||||| |                                                                                                                                                                                                                                                                                                             C
  ACCGGGACAAACCTA G   AGATT G                                                                                                                                                                                                                                                                                                             
TT               T ---     - ATTCAATCTCCAATATCAATAAGAGATTGAGTACTGATCGGGAGTTGATTGAGATCGGTTTATCCACAAACCTACGTTCCCAATTTAACTGTTATTTACATGAAAGGGTAAGTAAACCGAGGAAGGGTCGGTCTAAACCACACCGGCCGACAACACACCGGAGGAGGGCGAGTGTTTACTGTAACGAGGTGTACCATGGAACGCACGGCAAAACGGTAACGACCGCCGCCCGGTAAAAAGGTAATGAGGTATACCATGGAACGCCCGACAAAACGGTAACAACCCTCCGCCGCTGTGCTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850808

ATTGGCCCTGTTTGGATCCATGGGTTAGAGTTAGATTTAGCTATTTGGGGCTCAAATAGCCCTAAAGTATCCAAACATGAGGGTTAGATTGGGGTTATTTGCATCTAACCCACCCAAAAAACTATCCCCCCAAAGAGGTGCTTATTTGGGCTATTTGGGACTATTTAAGGCGGGGCCCACAGGAAAAGGGATCGGCTGTATCGCACGGGATCTCCACTCACGATGCCTCCCAGCCACGATCCCTCCCAGTTACCAGCACTGCTGCCTCCCAGCTCGCCTCGCCTCCGCCTCTCAACCGCGCCACCACCTCCAAGCCGTGCTGCCGCCTCCCAATCGTGTCGCCGCCTCCCAACAATGGCAAAACAGCCCGCAAGGTACCATATGGAGTAATGGAAAAATGGCCCGCCGCCAGCAATGGCAAAACGGCACGCAAGGTACCATGTGGAGCAATGTCATTTGTGAGCGGGAGGAGGCCACACAACAGCCGGCCACACCAAATCTGGCTGGGAAGGAGCCAAATGAATGGGAAAGTACATTTATTGTCAATTTAACCCTTGCATCCAAACACCTATTTGGCTAGAGTTAGTTGAGGGCTAGTCATGAGTTAGAGAATAACTATAACCTCTAACTTAGTTAGAGTATCCAAACAGGGCCATT

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