SE2850810

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9815
  • Sorghum bicolor
  • SE2850810
  • PIF/harbinger
  • To1
  • chromosome_10:54515304-54515550
  • TTA
  • AGGCCTTGTTTAGATTCAAATTTTTTTTGGATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             A    ------------        TT       GATA    AG   TT   TT   -----------         ACATTGTCAAATCATGGAGTAACTAGGCTTAAAAGTTTCGTCTCACG
  AGGCCTTGTTTAG TTCA            AATTTTTT  GGATTTT    CTGT  CAC  TCG  TTT           ATTTGACAA                                               
  ||||||||||||| ||||            ||||||||  |||||||    ||||  |||  |||  |||           |||||||||                                               A
  TCCGGAACAAATC AAGT            TTGAAAAG  TCTAAGA    GGCA  GTG  AGC  AGA           GTACCTCGT                                               
AT             -    GGGTTTTGTTTT        -T       ----    --   -T   TT   ACACCGTATAC         AATTTATATCTACTTTTGTTTTTGATTAACGAGCCAAACAGACATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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