Plant MITE

SE2830811

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9816
Sorghum bicolor
SE2830811
hAT
Hat2
chromosome_1:63700020-63700203
AGTTAGAA
TAAGGATGGGGATGGCCCTCCAAATGGATACCCGTGGTTCTTCTCTAGTGTAATTTAACGAACTAAATAGACAA

Secondary structure and sequence

TSD TIR

5'

3'

AGTTAGAA               CC      A    ------                           T  C         A  C  TTCCTTT
        TAAGGATGGGGATGG  CTCCAA TGGA      TACCCGTGGTTCTTCTCTAGTGTAATT AA GAACTAAAT GA AA       
        |||||||||||||||  |||||| ||||      ||||||||||||||||||||||||||| || ||||||||| || ||       C
        ATTCCTACCCCTGCC  GAGGTT GCCT      ATGGGCGTCAAGAAGAGATCACATTGA TT CTTGATTTA CT TT       
AAGATTGA               AC      C    TTGCCC                           T  A         -  T  TTTACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830811

AGTTAGAATAAGGATGGGGATGGCCCTCCAAATGGATACCCGTGGTTCTTCTCTAGTGTAATTTAACGAACTAAATAGACAATTCCTTTCCTCATTTTTTTCATTTAGTTCATTTAGTTACACTAGAGAAGAACTGCGGGTACCCGTTTCCGCTTGGAGCACCGTCCCCATCCTTAAGTTAGAA

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