SE2810814

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9819
  • Sorghum bicolor
  • SE2810814
  • Tc1/Mariner
  • St9
  • chromosome_9:7546284-7546546
  • TA
  • TACTCCCTCCATCCCAAATTATAAGTCATTCCAAGAATCTTGGAAAGTCAAAGCATTTAAAGTTTGACCAAATTTATATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                 A                          A             AA           AT     T  -TAACATAATAAC          C   CT    ATCATTAGGTTTTTCATTAG
TACTCCCTCCATCCCAA TTATAAGTCATTCCAAGAATCTTGGA AGTCAAAGCATTT  AGTTTGACCAA  TTATA GA             ATTTATGATA CAA  AAGT                    
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||  |||||||||||  ||||| ||             |||||||||| |||  ||||                     
ATGAGGGAGGTAGGGTT AATATTCAGTAAGGTTCTTAGAACCT TCAGTTTTGTAGA  TTAAACTGGTT  AATAT CT             TAAATACTGT GTT  TATC                    
                 A                          C             -G           GC     -  TTTTTAATCTTTC          A   --    TATAATGATACTTTTATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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