Plant MITE

SE2850816

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9821
Sorghum bicolor
SE2850816
PIF/harbinger
To2
chromosome_3:1503415-1503966
CAG
A

Secondary structure and sequence

TSD TIR

5'

3'

 C       AAACAAATGCGTCAAACAGTTGCTCTGGTGAGTCTGGTAGGCTTCCAATTTAGGCCTTGTTTAGTTTCCAAAAAATTTTGCAAAATTTTTCAGATTCCCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGACACAAATAAAAACTAATTACACAGTTTGGTCGAAATTGACGAGACGGATCTTTTAAGCCTAGTTAGTCCATGATTGGACAATATTTGTCAAATACAAACAAAAAGCTATAGTGTCAATTTTG
  AGTGGCT                                                                                                                                                                                                                                                                           
  |||||||                                                                                                                                                                                                                                                                           C
  TCCGGAA                                                                                                                                                                                                                                                                           
AT       CAAATCAAGTGGGACTTTCGATTTTTCAAAAATTCTAAGAGGCAGTGTAGCTTAGAACACCGTGTACGTACTTTGTAATTTATATCTGCTTTTGTTTTTGATTAATGTGTCAAATCGACATTTAGTGCTCTGCTTAGAAAACTAGGATCAATCATGTACTAACTTATTATAAACAGTATTTGTTTGCTTTCACGATGTCATGTCTTTTGAAAAGTGAAAAGCCTTGATTTTGTTCCGGATTCCGGAACAAATCAAGGTTTTATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850816

CAGTGGCTAAACAAATGCGTCAAACAGTTGCTCTGGTGAGTCTGGTAGGCTTCCAATTTAGGCCTTGTTTAGTTTCCAAAAAATTTTGCAAAATTTTTCAGATTCCCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGACACAAATAAAAACTAATTACACAGTTTGGTCGAAATTGACGAGACGGATCTTTTAAGCCTAGTTAGTCCATGATTGGACAATATTTGTCAAATACAAACAAAAAGCTATAGTGTCAATTTTGCAAAATATTTTGGAACTAAACAAGGCCTTAGGCCTTGTTTTAGTTCCGAAAAGTGAAAAGTTTTCTGTACTGTAGCACTTTCGTTTGTTTATGACAAATATTATTCAATCATGTACTAACTAGGATCAAAAGATTCGTCTCGTGATTTACAGCTAAACTGTGTAATTAGTTTTTGTTTTCGTCTATATTTAATGTTTCATGCATGTGCCACAAGATTCGATGTGACGGAGAATCTTAAAAACTTTTTAGCTTTCAGGGTGAACTAAACAAGGCCTTA

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