SE2850817

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9822
  • Sorghum bicolor
  • SE2850817
  • PIF/harbinger
  • To2
  • chromosome_7:56376299-56376548
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 CA    A             TTTC     - CCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAATTCCACAGTTTGGT
  AGGCCTTGTTTAGTTCC  AAAA ATTTTGCAAAATT    AGATT C                                                                              
  |||||||||||||||||  |||| |||||||||||||    ||||| |                                                                              C
  TCCGGAACAAATCAAGG  TTTT TAAAACGTTTTAG    CTGTG C                                                                              
AA                 --    A             ----     A ATCGAGAAAGCAAACATAAACTGTTTATAACAGGTTAGTACCGGATTGATGCAAGTTTTCTAAGCAGAGCAGTTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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