Plant MITE

SE2810818

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9823
Sorghum bicolor
SE2810818
Tc1/Mariner
St7
chromosome_1:9059024-9059293
TA
TACTCCCTCCATACCCATAAAGAAAGTCATTTTGGACAAGG

Secondary structure and sequence

TSD TIR

5'

3'

           -------           A     A   T      G TTTG    AAAAAT  GGAACATAAATCATGAATAACTTTTAAGTTGTTGAATTTAGAAATGTGAAAACCATATGAATAGATTTATCTTGAA
TACTCCCTCCA       TACCCATAAAG AAGTC TTT GGACAA G    GGTC      TG                                                                            
|||||||||||       ||||||||||| ||||| ||| |||||| |    ||||      ||                                                                            A
ATGAGGGAGGT       ATGGGTATTTC TTCAG AAA CCTGTT C    CCAG      GT                                                                            
           ATCAGGT           C     C   T      G TGTG    ----AG  TTCGGATTGAAACTGAGGAACAAAAATATTTTTATAAATAGTTTTTCACGATATACATATGAAAATACTTTCATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810818

TACTCCCTCCATACCCATAAAGAAAGTCATTTTGGACAAGGTTTGGGTCAAAAATTGGGAACATAAATCATGAATAACTTTTAAGTTGTTGAATTTAGAAATGTGAAAACCATATGAATAGATTTATCTTGAAAAATACTTTCATAAAAGTATACATATAGCACTTTTTGATAAATATTTTTATAAAAACAAGGAGTCAAAGTTAGGCTTTGGAGACCGTGTCGTTGTCCTAAACGACTTCCTTTATGGGTATGGACTATGGAGGGAGTA

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