SE2850820

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9825
  • Sorghum bicolor
  • SE2850820
  • PIF/harbinger
  • To2
  • chromosome_6:50511826-50512074
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAATTTTGGGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G    -           G     AGACACTGTA            -  ATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACC
  AGGCCTTGTTTA TTCC GAAAAATTTTG GAAAT          GCATTTTCGTTT GT                                                                  
  |||||||||||| |||| ||||||||||| |||||          |||||||||||| ||                                                                   
  TCCGGAACAAAT AAGG CTTTTTAAAAC TTTTA          TGTAAGGGGCAG GT                                                                  
AA            G    G           G     -----AAAAG            T  AGCTTAGAAATCTGCGTACGTACTTCATAATTTATATTTGCTTTTATTTTTGATTAACGTGTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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