Plant MITE

SE2810826

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9831
Sorghum bicolor
SE2810826
Tc1/Mariner
St11
chromosome_7:54822072-54822356
TA
TACTCCCTCCGTCCATTAGTCTTCTTCGTTTAAGC

Secondary structure and sequence

TSD TIR

5'

3'

     C           A     CT              TG ACAGAGACCAAGGAGCATGAAAGACTCACGTCTTTTCAGTAAATCATTGTGGTCCAATTAATCTAATTAATGTGCATGCCTGCATGCAACCAATGAACAAC
TACTC CTCCGTCCATT GTCTT  TCGTTTAAGCCTTG  C                                                                                                     
||||| ||||||||||| |||||  ||||||||||||||  |                                                                                                     C
ATGAG GAGGTAGGTAA TAGAG  AGTAAATTCGTTTT  C                                                                                                     
     A           A     TT              -- AAAAAGAAGGTTAATAGAGGTAGTAGAACTCCACTAGTCAATATTAATACCGGTAAGGAACCTACATACGTGTGCAGAGGTACGTCCTGAACCCGGTAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810826

TACTCCCTCCGTCCATTAGTCTTCTTCGTTTAAGCCTTGTGCACAGAGACCAAGGAGCATGAAAGACTCACGTCTTTTCAGTAAATCATTGTGGTCCAATTAATCTAATTAATGTGCATGCCTGCATGCAACCAATGAACAACCAAGATGGCCCAAGTCCTGCATGGAGACGTGTGCATACATCCAAGGAATGGCCATAATTATAACTGATCACCTCAAGATGATGGAGATAATTGGAAGAAAAACTTTTGCTTAAATGATTGAGATAAATGGATGGAGAGAGTA

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