Plant MITE

SE2850832

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9837
Sorghum bicolor
SE2850832
PIF/harbinger
To14
chromosome_10:33692043-33692291
TAA
AGGCCTTGTTTAGTTCCTAAAATATTTTGCAAAATTTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA            G   C    ATA           -------------     -----ACATT       - CA   AATTTTACGGCACATGCATGGAGCACTAAATATAGATAAAAGAAATAACTAATTAC
  AGGCCTTGTTTA TTC TAAA   TTTTGCAAAAT             TTTTC          CTCCATC A  TCG                                                        
  |||||||||||| ||| ||||   |||||||||||             |||||          ||||||| |  |||                                                        A
  TCCGGAACAAAT AAG ATTT   AAAACGTTTTA             AAAAG          CTATTTA A  ACA                                                        
AA            G   -    AAA           TACTTATCATCGT     CAAACATAAA       T --   GGTTAATACCTGATTGATCTGAGTTTTCTAAGTAGAGCGTTTAATATCTATTTAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850832

TAAGGCCTTGTTTAGTTCCTAAAATATTTTGCAAAATTTTTCACATTCTCCATCACATCGAATTTTACGGCACATGCATGGAGCACTAAATATAGATAAAAGAAATAACTAATTACACAATTTATCTATAATTTGCGAGATGAATCTTTTGAGTCTAGTTAGTCCATAATTGGACAATATTTATCAAATACAAACGAAAATGCTACTATTCATATTTTGCAAAAAAATTTAGAAGTAAACAAGGCCTAA

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