SE2850833

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9838
  • Sorghum bicolor
  • SE2850833
  • PIF/harbinger
  • To16
  • chromosome_6:52586024-52586235
  • TTA
  • AGGGCACTCACAATGCAGACTCTATCATAGAGTCTAAAGTTATTTATTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 -                    A T      -    ---------------CTC   C  TGTGGACTTGGAGTCTAAATAAGATTTGGAGTCTTAT
  AGGGCACTCACAATGCA GACTCTATCATAGAGTCTAA G TATTTA TTAC                  GAA AA                                     
  ||||||||||||||||| |||||||||||||||||||| | |||||| ||||                  ||| ||                                     T
  TCCCGTGAGTGTTACGT CTGAGATAGTGTCTCAGGTT C GTGAAT AATG                  ACG AC                                     
AT                 T                    - T      T    TATAATAAATACCATAAA   -  TACACCGTCGTATAAATAACTTCTTTCTCCATCTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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