SE2850835

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9840
  • Sorghum bicolor
  • SE2850835
  • PIF/harbinger
  • To2
  • chromosome_3:1557886-1558136
  • TTA
  • AGGCCTTATTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       A        CAATTTTTTT   G     GACAC  TAGCATTTTCGTTTGTATTTGACAAGTATTGTCAAATCATAGACTAACTAGGCTCAAAAGATTTGTCTCGTCAATTCCGACCAAACTGT
  AGGCCTT TTTAGTTT          GGA AAATC     TG                                                                                         
  ||||||| ||||||||          ||| |||||     ||                                                                                          
  TCCGGAA AAATCAAG          GTT TTTTA     AA                                                                                         
AT       C        ---------A   -     -----  ATGTTTTAAAAAATCTAAGAGGCAGTGTAGCTTAGAAATCTGCATACGTACCTCATAATTTATATCTGCTTTTATTTTTTTGATTAACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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