SE2810836

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9841
  • Sorghum bicolor
  • SE2810836
  • Tc1/Mariner
  • St9
  • chromosome_3:68908650-68908877
  • TA
  • TACTCCCTCCGTCCCAAATTATAAGTCATTCCAAGAATCTTTGAGAGTCAAAGTTTTTCAAGTTTGACCAAATTTATATAGCAAAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
            C                            T            -    C         C   TT    T  C      ATAACATT     TACCAACCAAGTATC
TACTCCCTCCGT CCAAATTATAAGTCATTCCAAGAATCTT GAGAGTCAAAGT TTTT AAGTTTGAC AAA  TATA AG AAAATA        TTTGG               
|||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||  |||| || ||||||        |||||                
ATGAGGGAGGCA GGTTTAATATTCAGTAAGGTTCTTAGAA CTCTCAGTTTCG AAAA TTCAAACTG TTT  ATAT TC TTTTAT        TCTAA               
            A                            C            T    A         T   TT    C  T      -----ATT     ATACTTCTTAGATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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