Plant MITE

SE2850838

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9843
Sorghum bicolor
SE2850838
PIF/harbinger
To11
chromosome_8:49337763-49337998
TTA
AGGCCCTGTTTGGTTG

Secondary structure and sequence

TSD TIR

5'

3'

TT   CCC          CTTC   TTTTTTCAACACCTATCACATCGAATGTTTAGACACATGCATGGAGTACTAAATATAGACTATTTACGAAACTAAAAACACAGCTAGAGAATA
  AGG   TGTTTGGTTG    TGA                                                                                             
  |||   ||||||||||    |||                                                                                              
  TCC   ACAAACCAAC    ACA                                                                                             
AT   CCC          CTCC   ATTTCAAATTGTTCATAACATCGTAAAAGCAAAATAAACCATTAATCACAGGTTAGTACCTGTTTAATCCGAATTTTATAAACAGAGCGTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850838

TTAGGCCCTGTTTGGTTGCTTCTGATTTTTTCAACACCTATCACATCGAATGTTTAGACACATGCATGGAGTACTAAATATAGACTATTTACGAAACTAAAAACACAGCTAGAGAATAATTTGCGAGACAAATATTTTAAGCCTAATTTGTCCATGATTGGACACTAATTACCAAATAAAACGAAAATGCTACAATACTTGTTAAACTTTAACACCTCCAACCAAACACCCCCTTA

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