Plant MITE

SE2830840

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9845
Sorghum bicolor
SE2830840
hAT
Hat7
chromosome_1:27679585-27680136
CTTGCAAC
TTGCAACCAATGTTTTCTGGTC

Secondary structure and sequence

TSD TIR

5'

3'

C      C          T     --      CGAT     T  ACCTGGGACCGACCAGGCGATTAATCGCGATTAATCAGTGACCAGGTCGATTAATCGACCCTGGTCGTCCCCCTGGTCGTCCCTGGTCGTCCAGGCATATCAGCTGGTCGACCTATATATATACCTCTATATATACACTATATTATACACAATAAAGGAAGCATCAAGACTGCATTACTGTAAACCAACATTCCTCTTCATCTTCAACTCTTTTTGATGTAAACCAACATCTCCT
 TTGCAA CAATGTTTTC GGTCG  GCTGGT    CCTGG CG                                                                                                                                                                                                                                           
 |||||| |||||||||| |||||  ||||||    ||||| ||                                                                                                                                                                                                                                           T
 AACGTT GTTACAAAAG CCAGC  GCTAAT    TAGCG CT                                                                                                                                                                                                                                           
C      C          T     AG      ----     -  AATTAGTGCTAATTAGCAGGACCAGCCAATCCTCACGAGCTAATCCTCCAGGCTGGGCTGGTCCAGCTGGTCTTTGGACCAGCAGGCTAATCAGCAGGTGAATAGCGCTAATTAGCAGGCTAATCCTGTACCTGCTGGTCCAACACACGAGACAAAAACCCGAAAAAACTGACCCGTCTATACACCCCCCATACCTCTACGACAACCAACAGGGTCAAGAGGTCTTTATCAATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830840

CTTGCAACCAATGTTTTCTGGTCGGCTGGTCGATCCTGGTCGACCTGGGACCGACCAGGCGATTAATCGCGATTAATCAGTGACCAGGTCGATTAATCGACCCTGGTCGTCCCCCTGGTCGTCCCTGGTCGTCCAGGCATATCAGCTGGTCGACCTATATATATACCTCTATATATACACTATATTATACACAATAAAGGAAGCATCAAGACTGCATTACTGTAAACCAACATTCCTCTTCATCTTCAACTCTTTTTGATGTAAACCAACATCTCCTTCTTAACTATTTCTGGAGAACTGGGACAACCAACAGCATCTCCATACCCCCCACATATCTGCCCAGTCAAAAAAGCCCAAAAACAGAGCACACAACCTGGTCGTCCATGTCCTAATCGGACGATTAATCGCGATAAGTGGACGACTAATCGGACGACCAGGTTTCTGGTCGACCTGGTCGGGTCGGACCTCCTAATCGAGCACTCCTAACCGACCAGGACGATTAATCGTGATTAATCGCGATTAATCGGACGACCTGAAAACATTGCTTGCAAC

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