Plant MITE

SE2810841

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9846
Sorghum bicolor
SE2810841
Tc1/Mariner
St13
chromosome_1:3696362-3696598
TA
TACTCCCTCCATCCAAATTAAAGACGTTTGACTTTTTTGACCCCAAGTTTGATCACTCGTCTTATTCAAAAAATTTGTGCAAATACAGTCA

Secondary structure and sequence

TSD TIR

5'

3'

     CC       -      -                     C C                            A          T   G   -AATTTAA   -ATT    AAGAACTTTT
TACTC  TCCATCC AAATTA AAGACGTTTGACTTTTTTGAC C AAGTTTGATCACTCGTCTTATTCAAAAA TTTGTGCAAA ACA TCA        GTC    CTTG          
|||||  ||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||| |||        |||    ||||           
ATGAG  AGGTAGG TTTAAT TTCTGCAAACTGAAAAAACTG G TTCAAACTGGTGAGCAGAATAAGTTTTT AAACACGTTT TGT AGT        CAG    GAAC          
     TT       G      A                     T A                            -          -   -   GAAGAAAA   CACC    CAAATTATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810841

TACTCCCTCCATCCAAATTAAAGACGTTTGACTTTTTTGACCCCAAGTTTGATCACTCGTCTTATTCAAAAAATTTGTGCAAATACAGTCAAATTTAAGTCATTCTTGAAGAACTTTTACTATTAAACCAAGCCACGACAAAAGAAGTGATGTTTTGCACAAATTTTTGAATAAGACGAGTGGTCAAACTTAGTGTCAAAAAAGTCAAACGTCTTATAATTTGGGATGGATTGAGTA

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