Plant MITE

SE2850842

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9847
Sorghum bicolor
SE2850842
PIF/harbinger
To2
chromosome_9:55179960-55180208
TAA
AGGCCTTGTTTAGTTCCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA                     -T            CGACAC  T     TTTC      --   T --------  -  ATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTC
  AGGCCTTGTTTAGTTCCAAAA  ATTTTGCAAAAT      TG AGCTT    GTTTGT  ATT G        AC AA                                                     
  |||||||||||||||||||||  ||||||||||||      || |||||    ||||||  ||| |        || ||                                                      
  TCCGGAACAAATCAAGGTTTT  TAAAACGTTTTA      TC TAAGG    GGCAGT  AGC T        TG GT                                                     
AA                     TT            -AAAAG  -     ----      GT   - TAGAAATC  T  ACGTACTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850842

TAAGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATCGACACTGTAGCTTTTTCGTTTGTATTTGACAAATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTTGTCTATATTTAATACTTCATGCATGTGTCTAAAGATTCGATGTGACGGGGAATCTGAAAAATTTTGCAAAATTTTTTTGGAACTAAACAAGGCCTAA

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