Plant MITE

SE2810843

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9848
Sorghum bicolor
SE2810843
Tc1/Mariner
St6
chromosome_4:51622263-51622522
TA
TACTCCCTCCGTCCCTGAAAGCTGCAATTTCTAGAGTTGTCCTAAGTCAAACTTTTACAACTTTGACCAAATTTATAGAAAA

Secondary structure and sequence

TSD TIR

5'

3'

             C         G              -  -  TA            AC            A           --AA     AGATTTATAGTACCAAATTAATACCATTAAATTTATTATA
TACTCCCTCCGTC CTGAAAGCT CAATTTCTAGAGTT GT CC  AGTCAAACTTTT  AACTTTGACCAA TTTATAGAAAA    TGCTA                                        
||||||||||||| ||||||||| |||||||||||||| || ||  ||||||||||||  |||||||||||| |||||||||||    |||||                                         
ATGAGGGAGGCAG GGTTTTCGA GTTGAGGATCTTAG CA GG  TCAGTTTGAAAA  TTGAAACTGGTT AAATATCTTTT    TAGTT                                        
             A         A              G  C  --            GA            G           ATCA     ATAGATACTGTATTTTATTCATAGAATGCTTTTATATAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810843

TACTCCCTCCGTCCCTGAAAGCTGCAATTTCTAGAGTTGTCCTAAGTCAAACTTTTACAACTTTGACCAAATTTATAGAAAAAATGCTAAGATTTATAGTACCAAATTAATACCATTAAATTTATTATAGAATATATTTTCGTAAGATACTTATTTTATGTCATAGATATTGATACTATTTTCTATAAAGTTGGTCAAAGTTAGAAAAGTTTGACTGGCACGGATTCTAGGAGTTGAAGCTTTTGGAGACGGAGGGAGTA

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