SE2830847

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9852
  • Sorghum bicolor
  • SE2830847
  • hAT
  • Hat59
  • chromosome_3:61393959-61394162
  • GCCTGAAG
  • CAGGGGCGGATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GCCTGAAG   G       G --------    -    TGCTGCCCGGGCTGTAGCACGGGGCGAAGCTCAATAGCAGTGGAGAATTGTTTCATAAAAAACACATA
        CAG GGCGGAT T        ACGG CCCG                                                                    
        ||| ||||||| |        |||| ||||                                                                    A
        GTC CCGCCTA G        TCGT TCCC                                                                    
GAAGTCCG   A       G TTTTTGTT    A    CCACGATTTATTGTCTCCGATTACCTGACTTAGAGATAGCACCCCCCGATTACCCGGAGTATCGGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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