Plant MITE

SE2830856

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9861
Sorghum bicolor
SE2830856
hAT
Hat4
chromosome_6:841619-841910
GTAATGAA
TAGGGATGAAAACGGTACGGATAT

Secondary structure and sequence

TSD TIR

5'

3'

GTAATGAA               TA           TGACCGTATTCGAGACCGAATTCGTTTAGAGAGGTTTAGATCTGTCCGTATCCGAGTCCGAATATTCAACATCCGATACCGTATCCGTATTCGAATACTTAAATCGTATA
        TAGGGATGAAAACGG  CGGATATTTTC                                                                                                              
        |||||||||||||||  |||||||||||                                                                                                               
        ATCCCTACTTTTGCC  GCCTATGCCTG                                                                                                              
AAGTAATG               TA           CCTACAGTGACTATAGTATAAACAAAAGTATAAAAACCAGCCTAAGCCTAAGCTTATGCCTATTATAGTTGATACAGCCTATTCTATACTAACCTACAGCTGTAGTGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830856

GTAATGAATAGGGATGAAAACGGTACGGATATTTTCTGACCGTATTCGAGACCGAATTCGTTTAGAGAGGTTTAGATCTGTCCGTATCCGAGTCCGAATATTCAACATCCGATACCGTATCCGTATTCGAATACTTAAATCGTATATTTGTGATGTCGACATCCAATCATATCTTATCCGACATAGTTGATATTATCCGTATTCGAATCCGAATCCGACCAAAAATATGAAAACAAATATGATATCAGTGACATCCGTCCGTATCCGATCCGTTTTCATCCCTAGTAATGAA

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