Plant MITE

SE2850857

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9862
Sorghum bicolor
SE2850857
PIF/harbinger
To79
chromosome_4:68006537-68006738
TAA
AGGTCATCTTCAATGGGAGTTTCAT

Secondary structure and sequence

TSD TIR

5'

3'

TA      -   T               GA   A  --      CACATTCATATTTTGGAAACAGTGCATAGGAGTTTCATGGGGATGAAACTCTCTCTACTC
  AGGTCA TCT CAATGGGAGTTTCAT  CAC GT  TTCCAA                                                            
  |||||| ||| |||||||||||||||  ||| ||  ||||||                                                             
  TCCGGT AGA GTTATTCTCAAAGTA  ATC CA  GTACGT                                                            
AA      C   -               --   T  AA      GTAATTTATACGACTACACTGCGATATAATTACTTCTCTCTCTACTATTCTCAAAGTACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850857

TAAGGTCATCTTCAATGGGAGTTTCATGACACAGTTTCCAACACATTCATATTTTGGAAACAGTGCATAGGAGTTTCATGGGGATGAAACTCTCTCTACTCCCATGAAACTCTTATCATCTCTCTCTTCATTAATATAGCGTCACATCAGCATATTTAATGTGCATGAAACTCTAATGAAACTCTTATTGAGACTGGCCTAA

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