Plant MITE

SE2850859

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9864
Sorghum bicolor
SE2850859
PIF/harbinger
To4
chromosome_3:71493884-71494116
TTA
AGGCCTGGTTTAGTTCGCGAAAATTTTTAGGTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT    C           G G   A        T     --- ACTACTTTCGGCTTTATTTGGTAATTATTATTTAATTATAGACTAACTAGACTCAAAAGGTTCGTCTTGCAAATT
  AGGC TGGTTTAGTTC C AAA TTTTTAGG TTCGC   T                                                                           
  |||| ||||||||||| | ||| |||||||| |||||   |                                                                            
  TCTG ACCAAATCAAG G TTT AAAAGTTC AAGAG   G                                                                           
AT    A           G A   A        T     GCA TATAGCTTAAAACACCGTGTACGTACTTCATAATTTATATCTATTTTTTCTATCGATTAACATGTCAAATGGACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850859

TTAGGCCTGGTTTAGTTCGCGAAAATTTTTAGGTTTCGCTACTACTTTCGGCTTTATTTGGTAATTATTATTTAATTATAGACTAACTAGACTCAAAAGGTTCGTCTTGCAAATTACAGGTAAACTGTACAATTAGCTATCTTTTTTATCTATATTTAATACTTCATGCATGTGCCACAAAATTCGATATGACGGAGAATCTTGAAAAATTTAGGGAACTAAACCAAGTCTTA

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