Plant MITE

SE2850861

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9866
Sorghum bicolor
SE2850861
PIF/harbinger
To3
chromosome_1:61485556-61485804
TTA
AGGCCTTGTTTAGTTCACCGTGAAAACCAAAAAGTTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT                ACC T     CCA          A    TTCCCGTCACATCGAATCTTGTGTCACATGCATAAAACATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTAGC
  AGGCCTTGTTTAGTTC   G GAAAA   AAAAGTTTTC AGAT                                                                                
  ||||||||||||||||   | |||||   |||||||||| ||||                                                                                T
  TCCGGAACAAATCAAG   C CTTTT   TTTTCAAAAG CATG                                                                                
AT                --- -     CAC          C    ACATCGTGAAAGCAAACAAACACTGTTTATAATAGATTAATATCTGATTGATCCTAGTTTTCTAAGCAGAGTACTAAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850861

TTAGGCCTTGTTTAGTTCACCGTGAAAACCAAAAAGTTTTCAAGATTTCCCGTCACATCGAATCTTGTGTCACATGCATAAAACATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTAGCTGTAAATCATGAGACGAATCTTTTGATCCTAGTTAGTCTATAATTAGATAATATTTGTCACAAACAAACGAAAGTGCTACAGTACCGAAAACTTTTCACTTTTCCGAACTAAACAAGGCCTTA

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