SE2850862

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9867
  • Sorghum bicolor
  • SE2850862
  • PIF/harbinger
  • To21
  • chromosome_4:5906607-5906790
  • TTA
  • AGGCCCTGTTTGGATCCCCTTGCTAAATTTTAGCTAGCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             A                           ----------------------       -- C  TTTAGTAGCTAAAGTTCCAAACACAT
  AGGCCCTGTTTGG TCCCCTTGCTAAATTTTAGCTAGCTAA                      ACTTTAG  T AC                          
  ||||||||||||| |||||||||||||||||||||||||||                      |||||||  | ||                          T
  TCCGGGACAAACC AGGGGAACGATTTAAAATCGATCGATT                      ACTGATT  C TT                          
AT             A                           TTAATAAAATCGATGAGAACTC       AC -  GATTTGATAAAATCGAAGAAAATCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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