SE2850865

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9870
  • Sorghum bicolor
  • SE2850865
  • PIF/harbinger
  • To4
  • chromosome_5:26330061-26330294
  • TTA
  • AGGCCTTGTTCAGTTGACGAAAATTTTTAGATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT          C     AC    A        T       CCGTAGTATTTTTATTTTTATTTAATAATTATTGTCCAATCATAGACTAACTAGACTCAAAAGATTCATCTCGCAA
  AGGCCTTGTT AGTTG  GAAA TTTTTAGA TTCGCTA                                                                            
  |||||||||| |||||  |||| |||||||| |||||||                                                                             
  TCCGGAACAA TCAAC  TTTT AAAAGTTT AAGAGGC                                                                            
AT          A     GA    A        T       AGTGTAGCTTAGCCGTGTACGTATTTCGTAATTTATATCTATTTTGTCTATTGATTAACATATCAAATAGCCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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