SE2850866

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9871
  • Sorghum bicolor
  • SE2850866
  • PIF/harbinger
  • To49
  • chromosome_3:53175127-53175477
  • TAA
  • AGGCCCTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA               GGGA   G     A    -AGG    A    A       CGTA     T  --GAA          G    -TAA       --             ACTCACCTA    C              A     C A     A     C      ATATG     TACT
  AGGCCCTGTTTAGTT    GTT AAAAA TTTT    TGTC CATC AATGTTT    GGATG CG     GGAGTATTTG ATAT    TAAAAAA  AACTAATTACATA         GAAA TGCGAGACGAATTT TTAAG C AATTA TCCAT ATTAGC     TAAGT    
  |||||||||||||||    ||| ||||| ||||    |||| |||| |||||||    ||||| ||     |||||||||| ||||    |||||||  |||||||||||||         |||| |||||||||||||| ||||| | ||||| ||||| ||||||     |||||    G
  TCCGGGACAAATCAA    TAA TTTTT AAAA    GTAG GTAG TTACAAA    CCTGT GT     CTTCATAAAT TATA    ATTTTTT  TTGATTAATGTGT         TTTT GTGCTCTGCTTAGA AATTC G TTAAT AGGTA TAATCG     ATTCA    
AA               -GAG   G     C    GTGA    G    C       ----     -  ATGTA          -    TCTA       AT             CAAACCAAC    A              A     A A     C     C      ---GA     CGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End