SE2820868

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9873
  • Sorghum bicolor
  • SE2820868
  • Mutator
  • M9
  • chromosome_2:20910287-20911063
  • ATAAGTAAA
  • GAGTAAAGTCCACCACCGGTCCCTAAACTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAGTAAA            C                   ATTAA                C            T   CGA       CCT    CTTGTTCGTCTGTATCATCTCAGTCCCTAAACTTGTTTAGTCGTGTCATCTCGGTCCCTAAACTTAGAAATCACCCGTTTAAGTCCTCAAATTTGTTCAGTTGTGTCATCCAGGTCCCTAAACTTGATTTTAAGTCTCATCTAGGTCAAAACAAAGTGATCTAAAAACTCTATATTAAAAATAATTCATAAATTTTTCATATGTACTCGAATGAAGACAAACTTTATATCAAAGTTGTAGCCCTTAATGTGTTCTACAACTTTATAGTTGAAATGTTTTTTATTTAAAGTTGT
         GAGTAAAGTCCA CACCGGTCCCTAAACTTGT     TGTGTCATCCCGGTCC TAAACTCGCAAA CGA   TTTAGGT   CGAA                                                                                                                                                                                                                                                                                                     
         |||||||||||| |||||||||||||||||||     |||||||||||||||| |||||||||||| |||   |||||||   ||||                                                                                                                                                                                                                                                                                                     T
         CTCATTTCAGGT GTGGCCAGGGATTTGAACA     ACACAGTAGGGCTAGG ATTTGAGTGTTT GCT   AAATCCA   GGAT                                                                                                                                                                                                                                                                                                     
AAATGAATA            A                   AACCC                A            T   AAC       --T    TTGAACAAGTCGACACAGTCGGATCAGGGATTTGAATCTTTAGAGGGTATATCCAGGAGTTTGAACAAGTCAGCATAGTAGGGCCAGGGATTTGAACAAAAATTCAGTAGGTCTAGTTTCGTCCCGCTTATATTTTTGAGATATATCCTTTTATTAAATATTGAAAAAGTATACTTGAGTTTACTTCTATTTGAAATATAGTTTAAACATCATTCGTTACGCTAGATGTTGAAACATCAACTTTTCAAAAATTTAACTTTAGAAAACCCCAGGGTTTTTTAAAACACTATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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