SE2830873

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9878
  • Sorghum bicolor
  • SE2830873
  • hAT
  • Hat17
  • chromosome_2:11519468-11519741
  • CATGCTAC
  • GCTACTAAGGATGAAAACGGTCGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAT  TAC               -T      ----   -   GAAA  GAA   CAATGTAGAAAACGAAAGCGGTCGGTACGGAATATTTCTATATTTTAGCAATTAAAGAGTACAAAAAAAGAATAAAAATGGTTGTGAAA
   GC   TAAGGATGAAAACGG  CGGAAA    CGG TCG    CG   TTA                                                                                         
   ||   |||||||||||||||  ||||||    ||| |||    ||   |||                                                                                         C
   CG   ATTCCTACTTTTGCC  GCCTTT    GGC TGG    CT   GGC                                                                                         
CAT  TAC               TT      ATAA   A   ----  ---   GAAAGCAAAAGATGTAATACTATAGCAAAAGATATAATATTTTGGCAAAAGCTTAAAACAGTTTGTATTTTTTAACAGTCAAAGTCAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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