SE2850874

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9879
  • Sorghum bicolor
  • SE2850874
  • PIF/harbinger
  • To4
  • chromosome_4:56364804-56365050
  • TTA
  • AGGCCTTGTTTACTTCTAAAAATTTTACAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            C  - T     TT       TTATT     AT -   CCTCACATCGAATCTTGCGGCACATGTATGGAGCATTGAATATAGATAAAAAAATAACTAATTGCACAGTTTGCCT
  AGGCCTTGTTTA TT C AAAAA  TTACAAA     TTCAA  T GCT                                                                            
  |||||||||||| || | |||||  |||||||     |||||  | |||                                                                            G
  TCCGGAATAAAT AA G TTTTT  AATGTTT     ATCTG  T ATA                                                                            
AT            C  C T     TT       ----T     -- G   TCGTAAAAGCAAACATAAACTATTTATAACAGGTTGGTATCTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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