Plant MITE

SE2850877

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9882
Sorghum bicolor
SE2850877
PIF/harbinger
To2
chromosome_6:40488152-40488400
TTA
AGGCCTTGTTTAGTTCCTTTAGGAA

Secondary structure and sequence

TSD TIR

5'

3'

TT            G    -        AAAATTC   G  ------- CTGT   ACTTTCGTTTGTTTGTGGTAATTATTGTCTAATTATAGATTAACTAGGTTCAAAAGATTCGTCTCGTCAATTTCGACT
  AGGCCTTGTTTA TTCC TTTAGGAA       TGC AC       A    AGC                                                                              
  |||||||||||| |||| ||||||||       ||| ||       |    |||                                                                               
  TCCGGAACAAAT AAGG GGGTTTTT       GGT TT       T    TCT                                                                              
AT            G    T        ------G   -  TTAAAAG ----   AAGGGACAGTGTAGCTTAGAAATCTGCATACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAATGTGTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850877

TTAGGCCTTGTTTAGTTCCTTTAGGAAAAAATTCTGCGACACTGTAGCACTTTCGTTTGTTTGTGGTAATTATTGTCTAATTATAGATTAACTAGGTTCAAAAGATTCGTCTCGTCAATTTCGACTAAACTGTGTAATTAGTTTTTATTTTCGTCTATATTTAATACTCCATGCATACGTCTAAAGATTCGATGTGACAGGGAATCTTGAAAATTTTTGGGTTTTTGGGTGGAAGTAAACAAGGCCTTA

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