SE2810881

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9886
  • Sorghum bicolor
  • SE2810881
  • Tc1/Mariner
  • St3
  • chromosome_4:67893086-67893613
  • TA
  • TACTCCCTCCATACCTATATTAGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                 T             CTAGACTCAAGGCTTATTTTCGCAAAAAATGTCGTTCCTCGCCCGCATGCTATGTTTAGGACATGATTGCCCTTGCCTGTTGCGCTCCTTGCTTCGCTGTGTCGCCTCGGTTGGCTTCGTCACCGTCCAATAAGCACTCGCGTCGAAGCAGCAATTAATTGTGTCGCCTCGGTCGCCTTTGTCACCGCCCAATCAGCGCGTCGAAGCAGTCCAAGCGCCGCATGCGGCTGCAT
TACTCCCTCCATACCTA ATTAGTTGGAGTC                                                                                                                                                                                                                                         
||||||||||||||||| |||||||||||||                                                                                                                                                                                                                                          
ATGAGGGAGGTATGGGT TAATCGACTGCAA                                                                                                                                                                                                                                         
                 T             ATCCTGTATTAACACGAATGGTTCCTCGGTAATTAATCTCCCATAAAAAGGGACAGATGGGGATAATTTATCCCATAGCCCACGTAGGAGATGCTCTTTTGATGAGACCAGTTGGCCAATCACGTCGTTCCGGTATCCCACTACACGTCACAAGCTGAGAACCACCGGTGTTTAAAAACGCCCCCAAACAAAAATAACAAACGGACGTACGGCCGCGAGGTAAAGTCGACCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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