Plant MITE

SE2850886

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9891
Sorghum bicolor
SE2850886
PIF/harbinger
To64
chromosome_4:6889935-6890593
TTA
AGAGCATCTCCAAGGGACTTTGCAAATGAATTTTGCATT

Secondary structure and sequence

TSD TIR

5'

3'

TT                A                      TGGTGTTG        GTCTCAAACTCATTTGCAAAGTCTAAAAATAGTCAAACTTCAAGGGACTTTGCATTTAGATTTGGCAAACCCAAAGTATGGACTCCACCTTCGATTTTTTTTTCACCGATCGCGCCCGCGCGTTTTTTTCCCTTCGCGCCATTTTGACGTACGTCGTGCGTGCCAGTCGCCGCCCAGGCCAGGTCCGCGCCAGTTGCCGCCCAGCCCAGGTCTTCGCGCCAGTCGCCGCCCAGCCCAGGCCACATTCGTCGTTCGTCACCGTCGTCGTTGGCGTCA
  AGAGCATCTCCAAGGG CTTTGCAAATGAATTTTGCATT        TTTGCAAA                                                                                                                                                                                                                                                                                    
  |||||||||||||||| ||||||||||||||||||||||        ||||||||                                                                                                                                                                                                                                                                                    G
  TCTCGTAGAGGTTCCC GAAACGTTTGTTTGAAACGTAA        GAGATAAA                                                                                                                                                                                                                                                                                    
AT                -                      -------C        CGTTTTTTCTCATCTTTTATGGAGAGGTTACCAAAACGTTTATTCCAAACGTTAAACCAATTGAAACGTTTATCTCCAACTCCGAAACGTATATACGTTTGGAAGGGTGGTGAAACGTAGATGTTAAAACCGGAAGGTGCAGCCTGAGACAGGGGGGCGGGGGGTGGGACGCGCTAAAAGAGATGCGGGCAGGCGGGAGGGACGGCGCGCGCGGGCGGGAGGTCGACGGCACGCACGGGCGGCAGGGAGGTCGACGGCATCCACCTACCTCGGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850886

TTAGAGCATCTCCAAGGGACTTTGCAAATGAATTTTGCATTTGGTGTTGTTTGCAAAGTCTCAAACTCATTTGCAAAGTCTAAAAATAGTCAAACTTCAAGGGACTTTGCATTTAGATTTGGCAAACCCAAAGTATGGACTCCACCTTCGATTTTTTTTTCACCGATCGCGCCCGCGCGTTTTTTTCCCTTCGCGCCATTTTGACGTACGTCGTGCGTGCCAGTCGCCGCCCAGGCCAGGTCCGCGCCAGTTGCCGCCCAGCCCAGGTCTTCGCGCCAGTCGCCGCCCAGCCCAGGCCACATTCGTCGTTCGTCACCGTCGTCGTTGGCGTCAGTTTGGCTCCATCCACCTACGGCAGCTGGAGGGACGGCGGGCACGCACGGCAGCTGGAGGGCGGGCGCGCGCGGCAGGGAGGGCGGACGGGCGTAGAGAAAATCGCGCAGGGTGGGGGGCGGGGGGACAGAGTCCGACGTGGAAGGCCAAAATTGTAGATGCAAAGTGGTGGGAAGGTTTGCATATATGCAAAGCCTCAACCTCTATTTGCAAAGTTAACCAAATTGCAAACCTTATTTGCAAAACCATTGGAGAGGTATTTTCTACTCTTTTTTGCAAATAGAGCAATGCAAAGTTTGTTTGCAAAGCCCTTGGAGATGCTCTTA

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