SE2850890

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9895
  • Sorghum bicolor
  • SE2850890
  • PIF/harbinger
  • To23
  • chromosome_2:61423312-61423619
  • TAA
  • AGGGGGTGTTTAGTTCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               C   -TTTTT       AAT   -----    TTTGGTCCATCATTTTGCAAAATGGAACTAAACACCATGCAAAATTTTTGGCAAAAGGGTGGTTATTCTCCATTTTGGATTTTGGCCTCAAGAGGCCAAAAGAAACCCA
  AGGGGGTGTTTAGTT CCC      TCCAAAA   TGT     GGGT                                                                                                             
  ||||||||||||||| |||      |||||||   |||     ||||                                                                                                             A
  TCCCCCACAAATCAA GGG      AGGTTTT   ACG     GGTT                                                                                                             
AA               A   TATCTT       ---   TTTAC    GATGAAACCTCACTACTTTTACGTTTTACGGTTTTAAAAGTCCCAGTACAAATCAAGGTAGGTTTTAACGTCTTAAATAACGGGGGTACTCTCGGAGAACTCCGAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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