Plant MITE

SE2850894

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9899
Sorghum bicolor
SE2850894
PIF/harbinger
To1
chromosome_2:73022582-73022830
TTA
AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT               CACTCCGAAA  C         T   ----   ---  CTCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAACAAAAACTAATTACATAGTTTGTC
  AGGCCTTGTTTAGTT          TC AAAAAGTTT CAA    GAT   TC                                                                              
  |||||||||||||||          || ||||||||| |||    |||   ||                                                                              T
  TCCGGAACAAATCAA          AG TTTTTTAAA GCC    GCG   AC                                                                              
AT               ----------  C         -   TAAA   ATG  ATCGTAAAAGCAAAAATAAACTGTTTATAACAGGTTAATAATTGATTGATCCTAGTTTTCTAAGCAGAGTGCTAAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850894

TTAGGCCTTGTTTAGTTCACTCCGAAATCCAAAAAGTTTTCAAGATTCCTCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAACAAAAACTAATTACATAGTTTGTCTGTAAATCGTGAGACGAATCTTTTGATCCTAGTTAGTTAATAATTGGACAATATTTGTCAAATAAAAACGAAAATGCTACAGTAGCGAAATCCGAAATTTTTTCGAAACTAAACAAGGCCTTA

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