Plant MITE

SE2830898

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9903
Sorghum bicolor
SE2830898
hAT
Hat4
chromosome_4:50150036-50150328
GTCACACC
CTAGGGATGAAAAACGGATCGGATA

Secondary structure and sequence

TSD TIR

5'

3'

GTCACAC             A   AT      CGAACG      ACTGATATCATATTTGTTTTTACATTTCTGGTCGTATTCGGATTCGAATACGGATAATGTCAACCATGTCGGATAAGATATGATTGGATGTCGACATCACAAATA
       CTAGGGATGAAAA CGG  CGGATA      GATATC                                                                                                         
       ||||||||||||| |||  ||||||      ||||||                                                                                                         T
       GATCCCTACTTTT GCC  GCCTAT      AAAGGC                                                                                                         
CCACACT             -   AT      -----A      TGGCATAAGCTCTGGCTTAAGCAAATCTCTCCAAGTCTAGACAGGCATAGGCTCAGGCTTATAAGTTGTAGGCTATGGCATAGGCATAGGCTTATGAATTTAGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830898

GTCACACCTAGGGATGAAAAACGGATCGGATACGAACGGATATCACTGATATCATATTTGTTTTTACATTTCTGGTCGTATTCGGATTCGAATACGGATAATGTCAACCATGTCGGATAAGATATGATTGGATGTCGACATCACAAATATACGATTTAAGTATTCGGATACGGATACGGTATCGGATGTTGAATATTCGGACTCGGATACGGACAGATCTGAACCTCTCTAAACGAATTCGGTCTCGAATACGGTCGGAAAATATCCGTACCGTTTTCATCCCTAGTCACACC

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