Plant MITE

SE2810901

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9906
Sorghum bicolor
SE2810901
Tc1/Mariner
St20
chromosome_6:1819207-1819384
TA
TACTCCCTCCGTCCTAGTATATAAGGCGTAACCACTTTTTGCTCATGTCCTATAATATA

Secondary structure and sequence

TSD TIR

5'

3'

         C                      C     TT C   -T T  TAT      AGGCGTG          AACATAAAT   G  CT
TACTCCCTC GTCCTAGTATATAAGGCGTAAC ACTTT  G TCA  G CC   AATATA       CTCTCTCACA         GCA TA  
||||||||| |||||||||||||||||||||| |||||  | |||  | ||   ||||||       ||||||||||         ||| ||   
ATGAGGGAG CAGGATCATATATTCCGCATTG TGGAG  C AGT  C GG   TTATGT       GAGAGAGTGT         CGT AT  
         A                      A     CC A   TT T  TTC      AAATTAA          ---------   G  CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810901

TACTCCCTCCGTCCTAGTATATAAGGCGTAACCACTTTTTGCTCATGTCCTATAATATAAGGCGTGCTCTCTCACAAACATAAATGCAGTACTACTAGTGCTGTGAGAGAGAATTAAATGTATTCTTGGTCTTTGAACCCGAGGTAGTTACGCCTTATATACTAGGACAGAGGGAGTA

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