SE2850905

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9910
  • Sorghum bicolor
  • SE2850905
  • PIF/harbinger
  • To1
  • chromosome_4:49338233-49338481
  • TAA
  • AGGCCTTGTTTAGATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C              CCTAACAATCCAAAACTTTA       -------------------- CCCATCACATCGAATCTTGCGGCACATGCATGGAGTACTAAATATAGATAAAAATAAAAAGTAATTAC
  AGG CTTGTTTAGATGCA                    CAAGATT                    C                                                                    
  ||| ||||||||||||||                    |||||||                    |                                                                     
  TCC GAACAAATCTACGT                    CTGTGAC                    C                                                                    
AA   C              ---TTTTATAAAACCTAAAA       ATCGTAAAAGCAAAAATAAA TGTTTGTAACAGGTTAGTACCTCATTGATCCGAATTTTCTAAACAGAGCGCTAAATGTTTGTTTGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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